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rabbit anti nrf2  (R&D Systems)


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    R&D Systems rabbit anti nrf2
    Rabbit Anti Nrf2, supplied by R&D Systems, used in various techniques. Bioz Stars score: 98/100, based on 1050 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    a Heat map (log 2 normalization) of genes encoding inflammasome components expressed in GoF ACSA-2+ astrocytes at day 3 post-TBI compared to TBI controls. b Immunoblot analysis and corresponding quantification of c ASC, d NLRP3 and e AIM2 inflammasome components. Expression was normalized to eIF2 loading control. f Immunoblot analyses and the corresponding quantification of protein expression of g TGM1, h <t>NRF2,</t> i IBA1, j HO-1, k MAC2, l OPN and m LCN2 in the ipsilateral insult region (ip) and in the contralateral uninjured (co) cortical brain tissue from control ( n = 3) and IKK2-CA GFAP ( n = 3) animals. Tissue was isolated at day 3 post-TBI. n Ratio of normalized OPN and LCN2. For quantification, protein levels were normalized to β-actin loading control. Bars indicate mean ± SEM. Statistical comparison by ordinary one-way ANOVA with Tukey’s multiple comparisons test. Exact significances indicated in graphs. Protein expression presented in arbitrary units (arb. units). Protein data are presented as biological replicates. Blue: control ipsi, white: control contra, red: IKK2-CA GFAP ipsi, black: IKK2-CA GFAP contra. OPN: Osteopontin (Spp1), HO-1: Heme oxygenase 1 (Hmox1), MAC2: Galectin-3 (Lgals3). Source data are provided as a file.
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    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of <t>NRF2</t> T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
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    Santa Cruz Biotechnology mouse monoclonal
    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of <t>NRF2</t> T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
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    Santa Cruz Biotechnology mouse monoclonal anti nrf2
    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of <t>NRF2</t> T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
    Mouse Monoclonal Anti Nrf2, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    R&D Systems rabbit anti nrf2
    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of <t>NRF2</t> T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
    Rabbit Anti Nrf2, supplied by R&D Systems, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Santa Cruz Biotechnology anti mouse nrf2
    (A–D) CD4 + T cells isolated from C57BL/6J mice were stimulated using anti-CD3 and anti-CD28 antibodies. (A) An illustration depicting in vitro activation of naive CD4 + T cells using anti-CD3 and anti-CD28 antibodies, resulting in CD4 + T cell proliferation. (B) Immunoblot shows <t>Nrf2</t> protein expression in the lysates of cells harvested after the indicated number of days (D0–D4) and a size ladder with 75 kDa standard. β-actin (42 kDa) is shown as the loading control and used for normalizing Nrf2 for quantification of relative density shown in the summary graph. The blot shown is representative of three independent experiments ( n = 3/group). (C) mRNA levels of Nqo1 were measured in CD4 + T cells activated for the indicated number of days ( n = 3). Data are representative of three independent experiments. (D) Histogram overlay showing Nrf2 protein expression in CD4 + T cells activated for the indicated number of days and the summary of MFI ( n = 3/group). (E) Relative gene expression of Nqo1 in WT and Keap1-KO CD4 + T cells on days 0 and 2 post-activation and Ho-1 on day 2 post-activation ( n = 3). Data are representative of three independent experiments. (F) WT and Keap1-KO mice were injected with anti-CD3 antibody to activate T cells in vivo . Histogram overlay comparing Nrf2 protein expression in CD4 + T cells from indicated mice on day 2. Summary of MFI are shown (n = 3–4/group). For – , one-way ANOVA was applied followed by Dunnett’s multiple comparison test for day-wise analysis of Nrf2 and target gene expression. All data are shown as mean ± SEM from the indicated number of sets of mice. * p < 0.05, ** p < 0.01, **** p < 0.0001.
    Anti Mouse Nrf2, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    a Heat map (log 2 normalization) of genes encoding inflammasome components expressed in GoF ACSA-2+ astrocytes at day 3 post-TBI compared to TBI controls. b Immunoblot analysis and corresponding quantification of c ASC, d NLRP3 and e AIM2 inflammasome components. Expression was normalized to eIF2 loading control. f Immunoblot analyses and the corresponding quantification of protein expression of g TGM1, h NRF2, i IBA1, j HO-1, k MAC2, l OPN and m LCN2 in the ipsilateral insult region (ip) and in the contralateral uninjured (co) cortical brain tissue from control ( n = 3) and IKK2-CA GFAP ( n = 3) animals. Tissue was isolated at day 3 post-TBI. n Ratio of normalized OPN and LCN2. For quantification, protein levels were normalized to β-actin loading control. Bars indicate mean ± SEM. Statistical comparison by ordinary one-way ANOVA with Tukey’s multiple comparisons test. Exact significances indicated in graphs. Protein expression presented in arbitrary units (arb. units). Protein data are presented as biological replicates. Blue: control ipsi, white: control contra, red: IKK2-CA GFAP ipsi, black: IKK2-CA GFAP contra. OPN: Osteopontin (Spp1), HO-1: Heme oxygenase 1 (Hmox1), MAC2: Galectin-3 (Lgals3). Source data are provided as a file.

    Journal: Nature Communications

    Article Title: NF-κB activation in astrocytes impairs wound healing after traumatic brain injury in male mice

    doi: 10.1038/s41467-026-70304-7

    Figure Lengend Snippet: a Heat map (log 2 normalization) of genes encoding inflammasome components expressed in GoF ACSA-2+ astrocytes at day 3 post-TBI compared to TBI controls. b Immunoblot analysis and corresponding quantification of c ASC, d NLRP3 and e AIM2 inflammasome components. Expression was normalized to eIF2 loading control. f Immunoblot analyses and the corresponding quantification of protein expression of g TGM1, h NRF2, i IBA1, j HO-1, k MAC2, l OPN and m LCN2 in the ipsilateral insult region (ip) and in the contralateral uninjured (co) cortical brain tissue from control ( n = 3) and IKK2-CA GFAP ( n = 3) animals. Tissue was isolated at day 3 post-TBI. n Ratio of normalized OPN and LCN2. For quantification, protein levels were normalized to β-actin loading control. Bars indicate mean ± SEM. Statistical comparison by ordinary one-way ANOVA with Tukey’s multiple comparisons test. Exact significances indicated in graphs. Protein expression presented in arbitrary units (arb. units). Protein data are presented as biological replicates. Blue: control ipsi, white: control contra, red: IKK2-CA GFAP ipsi, black: IKK2-CA GFAP contra. OPN: Osteopontin (Spp1), HO-1: Heme oxygenase 1 (Hmox1), MAC2: Galectin-3 (Lgals3). Source data are provided as a file.

    Article Snippet: The following antibodies were used for immunoblot stainings: Anti-TGM1 rabbit pAb (1:500, Abcam #ab103814), anti-Lipocalin-2 goat pAb (1:2000, R&D Systems #AF1857), anti-Osteopontin goat pAb (1:1000, R&D Systems #AF808), anti-Heme Oxygenase 1 rabbit pAb (1:2000, Abcam #ab13243), anti-NRF2 mouse mAb (1:1000, SantaCruz Biotechnology #sc-365949), anti-Galectin-3 rabbit pAb (SantaCruz Biotechnology #sc-20157), anti-IBA1 rabbit pAb (1:2000, FUJIFILM Wako #019-19741), anti-IKKβ rabbit mAb (1:1000, Cell Signaling Technology #8943), β-Actin rabbit mAb (1:500, Cell Signaling Technology #8457), HRP-linked anti-rabbit IgG (1:2000, Cell Signaling Technology #7074), anti-EAAT1 rabbit mAb (1:1000, Cell Signaling Technology #56845).

    Techniques: Western Blot, Expressing, Control, Isolation, Comparison

    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Derivative Assay, RNA Sequencing, Expressing, Transduction, Western Blot, Control, Membrane

    (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Real-time Polymerase Chain Reaction, Expressing, Control, Western Blot, Targeted Gene Expression, Transgenic Assay, Staining

    (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Staining, Gene Expression, RNA Sequencing, Expressing

    (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: RNA Sequencing, Expressing, Staining, Isolation, TUNEL Assay, Positive Control

    (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Pulse Chase, Staining, RNA Sequencing, Isolation, Gene Expression, Control

    (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Staining, Isolation, Targeted Gene Expression, RNA Sequencing, Control

    (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Targeted Gene Expression, Isolation, RNA Sequencing

    (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: In Vivo, Staining, RNA Sequencing, Isolation, Mutagenesis

    (A–D) CD4 + T cells isolated from C57BL/6J mice were stimulated using anti-CD3 and anti-CD28 antibodies. (A) An illustration depicting in vitro activation of naive CD4 + T cells using anti-CD3 and anti-CD28 antibodies, resulting in CD4 + T cell proliferation. (B) Immunoblot shows Nrf2 protein expression in the lysates of cells harvested after the indicated number of days (D0–D4) and a size ladder with 75 kDa standard. β-actin (42 kDa) is shown as the loading control and used for normalizing Nrf2 for quantification of relative density shown in the summary graph. The blot shown is representative of three independent experiments ( n = 3/group). (C) mRNA levels of Nqo1 were measured in CD4 + T cells activated for the indicated number of days ( n = 3). Data are representative of three independent experiments. (D) Histogram overlay showing Nrf2 protein expression in CD4 + T cells activated for the indicated number of days and the summary of MFI ( n = 3/group). (E) Relative gene expression of Nqo1 in WT and Keap1-KO CD4 + T cells on days 0 and 2 post-activation and Ho-1 on day 2 post-activation ( n = 3). Data are representative of three independent experiments. (F) WT and Keap1-KO mice were injected with anti-CD3 antibody to activate T cells in vivo . Histogram overlay comparing Nrf2 protein expression in CD4 + T cells from indicated mice on day 2. Summary of MFI are shown (n = 3–4/group). For – , one-way ANOVA was applied followed by Dunnett’s multiple comparison test for day-wise analysis of Nrf2 and target gene expression. All data are shown as mean ± SEM from the indicated number of sets of mice. * p < 0.05, ** p < 0.01, **** p < 0.0001.

    Journal: Cell reports

    Article Title: Nrf2 drives activation-driven expansion of CD4 + T cells by modulating glucose and glutamine metabolism

    doi: 10.1016/j.celrep.2025.116177

    Figure Lengend Snippet: (A–D) CD4 + T cells isolated from C57BL/6J mice were stimulated using anti-CD3 and anti-CD28 antibodies. (A) An illustration depicting in vitro activation of naive CD4 + T cells using anti-CD3 and anti-CD28 antibodies, resulting in CD4 + T cell proliferation. (B) Immunoblot shows Nrf2 protein expression in the lysates of cells harvested after the indicated number of days (D0–D4) and a size ladder with 75 kDa standard. β-actin (42 kDa) is shown as the loading control and used for normalizing Nrf2 for quantification of relative density shown in the summary graph. The blot shown is representative of three independent experiments ( n = 3/group). (C) mRNA levels of Nqo1 were measured in CD4 + T cells activated for the indicated number of days ( n = 3). Data are representative of three independent experiments. (D) Histogram overlay showing Nrf2 protein expression in CD4 + T cells activated for the indicated number of days and the summary of MFI ( n = 3/group). (E) Relative gene expression of Nqo1 in WT and Keap1-KO CD4 + T cells on days 0 and 2 post-activation and Ho-1 on day 2 post-activation ( n = 3). Data are representative of three independent experiments. (F) WT and Keap1-KO mice were injected with anti-CD3 antibody to activate T cells in vivo . Histogram overlay comparing Nrf2 protein expression in CD4 + T cells from indicated mice on day 2. Summary of MFI are shown (n = 3–4/group). For – , one-way ANOVA was applied followed by Dunnett’s multiple comparison test for day-wise analysis of Nrf2 and target gene expression. All data are shown as mean ± SEM from the indicated number of sets of mice. * p < 0.05, ** p < 0.01, **** p < 0.0001.

    Article Snippet: After blocking with 5% skimmed milk, the membrane was incubated with the anti-mouse Nrf2 (Santa Cruz Biotechnology). β-Actin was used as a loading control (Sigma).

    Techniques: Isolation, In Vitro, Activation Assay, Western Blot, Expressing, Control, Gene Expression, Injection, In Vivo, Comparison, Targeted Gene Expression

    (A) Naive CD4 + T cells isolated from Keap1-KO and wild-type (WT) littermate mice were labeled with cell trace dye and activated in vitro for 96 h. A representative histogram overlay shows the dye dilution, and the graph shows the summary of proliferation ( n = 5/group). (B) Representative histogram overlay comparing the cell size (FSC, forward scatter) of WT and Keap1-KO CD4 + T cells 96 h post-activation. Data are representative of three independent experiments. (C) Schematic diagram of in vivo BrdU incorporation assay after injecting anti-CD3 antibodies into the indicated mice. (D) Summary graphs of percentages of BrdU + CD4 + T cells within mesenteric lymph nodes of WT, Keap1-KO, and Nrf2-KO mice treated as in (C) (n = 3–6/group). (E) Schematic diagram of in vivo BrdU incorporation assay in OVA-TCR transgenic (OT-II)-WT, OTII-Keap1-KO, and OTII-Nrf2-KO mice after antigen challenge with ovalbumin. (F) Percentages of splenic BrdU + CD4 + T cells in indicated OT-II mice treated as in (E) ( n = 2/control group, n = 4–6/ovalbumin group). (G) Total splenocytes from OTII-WT and OTII-Keap1-KO mice were cultured in vitro with OVA peptide for 48 h in the presence of BrdU. Histogram overlay and graph shows percentages of BrdU + CD4 + Vβ5.1 + T cells (n = 3–4/group). (H) Daily cell counts of in vitro -activated WT, Keap1-KO, and Nrf2-KO CD4 + T cells were measured (n = 7–11/group). (I) Bar graphs showing the gene expression of indicated genes in Keap1-KO vs. WT CD4 + T cells 48 h post-activation. Data are obtained from RNA-seq analysis ( n = 3/group). (J) Representative histogram overlay and summary data of Apotracker green staining in CD4 + T cells 72 h post-activation in vitro (n = 3–4/group). All data are shown as mean ± SEM from the indicated number of sets of mice. * p < 0.05, ** p < 0.01, **** p < 0.0001. K-KO, Keap1-KO; N-KO, Nrf2-KO.

    Journal: Cell reports

    Article Title: Nrf2 drives activation-driven expansion of CD4 + T cells by modulating glucose and glutamine metabolism

    doi: 10.1016/j.celrep.2025.116177

    Figure Lengend Snippet: (A) Naive CD4 + T cells isolated from Keap1-KO and wild-type (WT) littermate mice were labeled with cell trace dye and activated in vitro for 96 h. A representative histogram overlay shows the dye dilution, and the graph shows the summary of proliferation ( n = 5/group). (B) Representative histogram overlay comparing the cell size (FSC, forward scatter) of WT and Keap1-KO CD4 + T cells 96 h post-activation. Data are representative of three independent experiments. (C) Schematic diagram of in vivo BrdU incorporation assay after injecting anti-CD3 antibodies into the indicated mice. (D) Summary graphs of percentages of BrdU + CD4 + T cells within mesenteric lymph nodes of WT, Keap1-KO, and Nrf2-KO mice treated as in (C) (n = 3–6/group). (E) Schematic diagram of in vivo BrdU incorporation assay in OVA-TCR transgenic (OT-II)-WT, OTII-Keap1-KO, and OTII-Nrf2-KO mice after antigen challenge with ovalbumin. (F) Percentages of splenic BrdU + CD4 + T cells in indicated OT-II mice treated as in (E) ( n = 2/control group, n = 4–6/ovalbumin group). (G) Total splenocytes from OTII-WT and OTII-Keap1-KO mice were cultured in vitro with OVA peptide for 48 h in the presence of BrdU. Histogram overlay and graph shows percentages of BrdU + CD4 + Vβ5.1 + T cells (n = 3–4/group). (H) Daily cell counts of in vitro -activated WT, Keap1-KO, and Nrf2-KO CD4 + T cells were measured (n = 7–11/group). (I) Bar graphs showing the gene expression of indicated genes in Keap1-KO vs. WT CD4 + T cells 48 h post-activation. Data are obtained from RNA-seq analysis ( n = 3/group). (J) Representative histogram overlay and summary data of Apotracker green staining in CD4 + T cells 72 h post-activation in vitro (n = 3–4/group). All data are shown as mean ± SEM from the indicated number of sets of mice. * p < 0.05, ** p < 0.01, **** p < 0.0001. K-KO, Keap1-KO; N-KO, Nrf2-KO.

    Article Snippet: After blocking with 5% skimmed milk, the membrane was incubated with the anti-mouse Nrf2 (Santa Cruz Biotechnology). β-Actin was used as a loading control (Sigma).

    Techniques: Isolation, Labeling, In Vitro, Activation Assay, In Vivo, BrdU Incorporation Assay, Transgenic Assay, Control, Cell Culture, Gene Expression, RNA Sequencing, Staining

    (A–D) Naive CD4 + T cells isolated from WT, Keap1-KO, and Nrf2-KO mice were activated in vitro for 12–24 h as in . The surface expression of CD62L (A), CD44 (B), CD25 (C), and CD69 (D) was measured by flow cytometry ( n = 2 unstimulated group, n = 3–8 stimulated group). (E–G) The levels of pZap-70 (E) and pS6 (G) at 24 h and pERK (F) at 12 h were compared between WT, Keap1-KO, and Nrf2-KO CD4 + T cells activated in vitro (n = 3–6/group). (H) Relative gene expression of IL-2 and IL-2ra in WT and Keap1-KO CD4 + T cells was measured by RT-qPCR 24 h post-activation ( n = 3). Data are representative of three independent experiments. (I) Heatmap of RNA-seq analysis 24 h post-activation comparing the gene expression levels in Keap1-KO vs. WT CD4 + T cells ( n = 3/group). (J) Secreted IL-2 from the culture supernatants of WT, Keap1-KO, and Nrf2-KO CD4 + T cells 48 h post-activation was measured by ELISA ( n = 4/group). (K) pSTAT5 levels were compared at 24 h post-activation is in 1(A) (n = 5–6/group). (L) Secreted IFN-γ from the indicted cultures was measured 72 h post-activation by ELISA (n = 4–6/group). Histogram overlays show representative data and graphs show mean ± SEM. * p < 0.05, ** p < 0.01, **** p < 0.0001.

    Journal: Cell reports

    Article Title: Nrf2 drives activation-driven expansion of CD4 + T cells by modulating glucose and glutamine metabolism

    doi: 10.1016/j.celrep.2025.116177

    Figure Lengend Snippet: (A–D) Naive CD4 + T cells isolated from WT, Keap1-KO, and Nrf2-KO mice were activated in vitro for 12–24 h as in . The surface expression of CD62L (A), CD44 (B), CD25 (C), and CD69 (D) was measured by flow cytometry ( n = 2 unstimulated group, n = 3–8 stimulated group). (E–G) The levels of pZap-70 (E) and pS6 (G) at 24 h and pERK (F) at 12 h were compared between WT, Keap1-KO, and Nrf2-KO CD4 + T cells activated in vitro (n = 3–6/group). (H) Relative gene expression of IL-2 and IL-2ra in WT and Keap1-KO CD4 + T cells was measured by RT-qPCR 24 h post-activation ( n = 3). Data are representative of three independent experiments. (I) Heatmap of RNA-seq analysis 24 h post-activation comparing the gene expression levels in Keap1-KO vs. WT CD4 + T cells ( n = 3/group). (J) Secreted IL-2 from the culture supernatants of WT, Keap1-KO, and Nrf2-KO CD4 + T cells 48 h post-activation was measured by ELISA ( n = 4/group). (K) pSTAT5 levels were compared at 24 h post-activation is in 1(A) (n = 5–6/group). (L) Secreted IFN-γ from the indicted cultures was measured 72 h post-activation by ELISA (n = 4–6/group). Histogram overlays show representative data and graphs show mean ± SEM. * p < 0.05, ** p < 0.01, **** p < 0.0001.

    Article Snippet: After blocking with 5% skimmed milk, the membrane was incubated with the anti-mouse Nrf2 (Santa Cruz Biotechnology). β-Actin was used as a loading control (Sigma).

    Techniques: Isolation, In Vitro, Expressing, Flow Cytometry, Gene Expression, Quantitative RT-PCR, Activation Assay, RNA Sequencing, Enzyme-linked Immunosorbent Assay